Simulation Examples

Below are multiple example that serve as a guide to how to run the program and overview of available options.

Example 1: Running the program.
Example 2: Random Selection and Culling.
Example 3: Phenotypic Selection and Culling.
Example 4: True Breeding Value Selection and Culling.
Example 5: Correlated Response to Selection.
Example 6: Index True Breeding Value Selection.
Example 7: Bivariate ssGBLUP.
Example 8: Multiple Progeny Quantitative Trait.
Example 9: Differential Sire Contribution by Age.
Example 10: Simulating a Fitness Trait.
Example 11: Simulating a Fitness and Quantitative Trait.
Example 12: Comparing Different EBV Prediction Methods.
Example 13: Truncating Animals.
Example 14: Quantitative Trait Minimize Inbreeding.
Example 15: Different Genotype Scenarios.
Example 16: Different Phenotype Scenarios.
Example 17: Forward-In-Time Mutation Events.
Example 18: Overview of Summary Statistics.

Geno-Diver Shiny App

The link for a plotting app can be found HERE and was developed to quickly plot trends across generation for multiple metrics. The app is designed to quickly determine if the current simulation parameters are what is desired and to troubleshoot any issues that arise without having to write code to plot the data across the different output files. At the current time metrics within the following output files can be utilized to generate trends across time: